SalariesByCity
Medical Assistant · Salary Comparison · 2026

Medical Assistant Salary: San Diego, CA vs San Francisco, CA

Side-by-side comparison of salary, taxes, cost of living, and take-home pay for Medical Assistants in San Diego, CA and San Francisco, CA, based on BLS OEWS 2026 data.

1Which City Pays More After Tax?

Higher Gross Salary
San Francisco, CA
$44,000 vs $53,000
Better Purchasing Power
San Diego, CA
$28,947 vs $28,495
Best Take-Home (COL-Adj)
San Diego, CA
$24,260 vs $23,881
2

Detailed Comparison

MetricSan Diego, CASan Francisco, CADiff
Median Annual Salary$44,000$53,000-$9,000
25th Percentile$33,880$40,810-$6,930
75th Percentile$56,320$67,840-$11,520
90th Percentile$70,400$84,800-$14,400
Cost of Living Index152186-34
State Income Tax9.3%9.3%
COL-Adjusted Median$28,947$28,495+$452
Est. Annual Take-Home$36,875$44,418-$7,543
COL-Adj. Take-Home$24,260$23,881+$379
Total Employment60,000130,000-70,000
▲ = Higher value wins for this metric. Diff = San Diego, CA minus San Francisco, CA.

3Summary Analysis

On paper, San Francisco, CA pays $9,000 more (median: $44,000 vs $53,000). However, after adjusting for cost of living (index 152 vs 186), San Diego, CA provides better purchasing power ($28,947 vs $28,495 equivalent). San Francisco, CA has the lower state tax rate (9.3% vs 9.3%).

Data: U.S. Bureau of Labor Statistics OEWS · 2026 · Cost-of-living indices from composite metro area data. Take-home estimates approximate only — consult a tax professional for accurate figures.